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rma background correction  (Partek)

 
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    Partek rma background correction
    Rma Background Correction, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rma+background+correction/rma+background+correction/pmc05362450__oncotarget___08___14860___s001-37-4-10
    Average 90 stars, based on 1 article reviews
    rma background correction - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: An androgen receptor mutation in the MDA-MB-453 cell line model of molecular apocrine breast cancer compromises receptor activity
    Article Snippet: Briefly, .cel files were imported using RMA background correction, Partek’s own GC content correction, and mean probe summarization.

    Article Title: Disabled cell density sensing leads to dysregulated cholesterol synthesis in glioblastoma
    Article Snippet: Normalization was performed using RMA background correction with the following Partek settings: adjust for GC content, quantile normalization, probeset summarization = mean.

    Article Title: Mitochondrial inhibition during preimplantation embryogenesis shifts the transcriptional profile of fetal mouse brain
    Article Snippet: Environmental stress results in perturbations to mitochondrial function in the preimplantation embryo and hinders subsequent embryo and possibly offspring development.. Global gene expression in fetal mouse brain was investigated following targeted mitochondrial inhibition by amino-oxyacetate (AOA) from the 2-cell to the blastocyst stage.. Blastocysts were transferred to pseudopregnant recipients and RNA extracted from Day 18 fetal brains for microarray interrogation.

    Article Title: The HSA21 gene EURL/C21ORF91 controls neurogenesis within the cerebral cortex and is implicated in the pathogenesis of Down Syndrome
    Article Snippet: We applied the following default Partek settings: RMA background correction, exclusion of probes containing SNPs, quantile normalization, mean probe set summarization, and log2-transformation.

    Transformation Assay:

    Article Title: Exposure of mice to secondhand smoke elicits both transient and long-lasting transcriptional changes in cancer-related functional networks.
    Article Snippet: Briefly, CEL files from all arrays were imported into the Partek software and included in a single analysis. .. Data were normalized according to Partek predefined criteria, including RMA Background Correction, Quantile Normalization, and Log (base 2) transformation. ..



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    Image Search Results


    Average AUC for RMA, RMA-noBG, MAS 5.0, dChip, and PLIER for detection of spiked-in genes in the Affymetrix Latin Square spikein experiments, according to the value of d, which is related to the log base 2 fold change between experiments.

    Journal: BMC Genomics

    Article Title: A distribution-free convolution model for background correction of oligonucleotide microarray data

    doi: 10.1186/1471-2164-10-S1-S19

    Figure Lengend Snippet: Average AUC for RMA, RMA-noBG, MAS 5.0, dChip, and PLIER for detection of spiked-in genes in the Affymetrix Latin Square spikein experiments, according to the value of d, which is related to the log base 2 fold change between experiments.

    Article Snippet: Therefore, DFCM has better sensitivity and specificity, as measured by ROC curves and area under the curve (AUC) than MAS 5.0, RMA, RMA with no background correction (RMA-noBG), GCRMA, PLIER, and dChip (MBEI) for preprocessing of Affymetrix microarray data.

    Techniques: